Basic Information
Locus ID:
CQ.Regalona.r1.4BG0004740
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 4635737 | 4637782 | - | CQ.Regalona.r1.4BG0004740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 75,885.83 Da | 40.75 | 76.42 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 273 | 323 | 9.5E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 373 | 436 | 4.94E-7 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 520 | 623 | 3.35E-7 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 527 | 636 | 6.9E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 447 | 2.6E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 382 | 439 | 0.002 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 380 | 441 | 8.778 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 383 | 438 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 47 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021734506.1 | increased DNA methylation 1-like [Chenopodium quinoa] | 0 |
| Q5PNS0 | PHD finger protein At3g20280 OS=Arabidopsis thaliana OX=3702 GN=At3g20280 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L4J6 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology