Basic Information
Locus ID:
CQ.Regalona.r1.4BG0003180
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 3257966 | 3270673 | + | CQ.Regalona.r1.4BG0003180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 66,802.65 Da | 59.67 | 58.98 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 136 | 186 | 3.59404E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 283 | 332 | 1.4E-8 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 205 | 267 | 9.6E-15 | IPR002867 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 136 | 169 | 2.2E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 274 | 1.35E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 217 | 5.89E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 334 | 3.09E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 559 | 586 | 3.37E-6 | IPR036443 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 216 | 5.0E-18 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 558 | 586 | 3.7E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 263 | 518 | 3.7E-83 | - |
| SMART | SM00647 | ibrneu5 | 280 | 341 | 0.054 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 205 | 267 | 3.9E-23 | IPR002867 |
| SMART | SM00547 | zf_4 | 561 | 585 | 1.9E-5 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 182 | 9.641949 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 132 | 345 | 50.630432 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 559 | 586 | 8.366031 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 563 | 582 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021734336.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Chenopodium quinoa] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KMM1 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology