Basic Information
Locus ID:
CQ.Regalona.r1.4BG0002330
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 2492541 | 2510675 | - | CQ.Regalona.r1.4BG0002330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 129,876.76 Da | 49.93 | 79.24 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 181 | 318 | 2.63439E-34 | - |
| CDD | cd00821 | PH | 21 | 120 | 1.05656E-11 | - |
| Pfam | PF00169 | PH domain | 20 | 124 | 4.7E-13 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 616 | 696 | 3.6E-21 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 1.2E-30 | IPR000198 |
| SUPERFAMILY | SSF50729 | PH domain-like | 13 | 129 | 3.56E-18 | - |
| SUPERFAMILY | SSF48619 | Phospholipase A2, PLA2 | 1040 | 1114 | 2.49E-8 | IPR036444 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 375 | 1.75E-33 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 150 | 374 | 4.0E-41 | IPR008936 |
| Gene3D | G3DSA:1.20.90.10 | Phospholipase A2 domain | 1044 | 1146 | 8.0E-20 | IPR036444 |
| Gene3D | G3DSA:2.30.29.30 | - | 10 | 127 | 9.8E-18 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 178 | 369 | 5.9E-28 | IPR000198 |
| SMART | SM00233 | PH_update | 19 | 127 | 2.7E-16 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.7531 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 372 | 29.871948 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 747 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 578 | - | - |
| Coils | Coil | Coil | 201 | 221 | - | - |
| Coils | Coil | Coil | 606 | 647 | - | - |
| Coils | Coil | Coil | 665 | 699 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_021734234.1 | rho GTPase-activating protein 7-like [Chenopodium quinoa] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L3V6 | Rho GTPase-activating protein 7-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology