Basic Information
Locus ID:
CQ.Regalona.r1.4BG0001260
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 1233746 | 1235614 | + | CQ.Regalona.r1.4BG0001260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 59,854.02 Da | 31.98 | 94.81 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 437 | 472 | 1.4E-4 | IPR006566 |
| Pfam | PF00646 | F-box domain | 80 | 113 | 5.1E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 75 | 150 | 2.09E-13 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 195 | 410 | 1.1E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 172 | 500 | 2.2E-13 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 67 | 115 | 7.9E-9 | - |
| SMART | SM00256 | fbox_2 | 82 | 123 | 7.2E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 76 | 124 | 9.497469 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59200.2 | - | 0 |
| RefSeq | XP_021729137.1 | F-box/LRR-repeat protein At3g26922-like [Chenopodium quinoa] | 0 |
| Q84W80 | F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana OX=3702 GN=At3g03360 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0J8BD11 | F-box domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g097040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 6 | Ah003362, Ah004975, Ah010432, Ah010433, Ah011144, Ah028126 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g112770, BVRB_5g112780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42324, Sbi_jg44916 |
| Amaranthaceae | Suaeda glauca | 14 | Sgl35055, Sgl35076, Sgl35086, Sgl40446, Sgl40461, Sgl40471 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000002595, gene:ENSEOMG00000008169 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.4BG0001260, CQ.Regalona.r1.4BG0001450 ... |
| Apiaceae | Apium graveolens | 3 | Ag10G01722, Ag3G02802, Ag9G02757 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00000298, Pov_00000300, Pov_00025260 |