Basic Information
Locus ID:
CQ.Regalona.r1.4AG0023990
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 66010235 | 66022797 | + | CQ.Regalona.r1.4AG0023990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 85,081.47 Da | 46.87 | 72.61 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 173 | 477 | 7.23555E-154 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 174 | 477 | 4.6E-46 | IPR001394 |
| Pfam | PF01753 | MYND finger | 83 | 120 | 5.7E-11 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 79 | 122 | 6.28E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 170 | 487 | 1.77E-89 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 72 | 127 | 1.3E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 169 | 492 | 1.3E-92 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 83 | 120 | 11.965635 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 174 | 480 | 48.457623 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 175 | 190 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 83 | 120 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 747 | 769 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021755587.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Chenopodium quinoa] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LXU6 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology