Basic Information
Locus ID:
CQ.Regalona.r1.4AG0023640
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 65455165 | 65468753 | - | CQ.Regalona.r1.4AG0023640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 91,972.83 Da | 32.10 | 79.95 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 673 | 798 | 3.36545E-23 | IPR033734 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 396 | 410 | 0.015 | IPR011659 |
| Pfam | PF01419 | Jacalin-like lectin domain | 676 | 798 | 1.1E-12 | IPR001229 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 455 | 473 | 0.042 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 111 | 133 | 0.0014 | IPR011659 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 672 | 797 | 1.14E-20 | IPR036404 |
| SUPERFAMILY | SSF52058 | L domain-like | 619 | 664 | 9.52E-5 | - |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 73 | 475 | 2.62E-25 | - |
| Gene3D | G3DSA:2.100.10.30 | - | 666 | 802 | 1.8E-30 | IPR036404 |
| Gene3D | G3DSA:2.120.10.30 | - | 288 | 485 | 6.4E-15 | IPR011042 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 566 | 665 | 9.2E-11 | IPR032675 |
| Gene3D | G3DSA:2.120.10.30 | - | 71 | 247 | 3.2E-9 | IPR011042 |
| SMART | SM00915 | Jacalin_2 | 667 | 799 | 3.6E-8 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 636 | 799 | 18.099796 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 806 | 826 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 805 | 826 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21680.1 | DPP6 N-terminal domain-like protein. | 0 |
| RefSeq | XP_048498469.1 | uncharacterized protein LOC104891772 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| A2WMH2 | Protein GOS9 OS=Oryza sativa subsp. indica OX=39946 GN=GOS9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LXY3 | Peptidase_S9 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology