Basic Information
Locus ID:
CQ.Regalona.r1.4AG0021860
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RNA polymerase II-associated protein 3-like isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 63177278 | 63180305 | - | CQ.Regalona.r1.4AG0021860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 54,816.54 Da | 35.30 | 91.77 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 13 | 51 | 3.6E-8 | IPR001810 |
| SUPERFAMILY | SSF48452 | TPR-like | 394 | 477 | 3.37E-20 | IPR011990 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 86 | 4.32E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 48 | 2.0E-7 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 389 | 479 | 7.4E-26 | IPR011990 |
| SMART | SM00028 | tpr_5 | 394 | 427 | 0.25 | IPR019734 |
| SMART | SM00256 | fbox_2 | 12 | 52 | 5.9E-7 | IPR001810 |
| SMART | SM00028 | tpr_5 | 428 | 460 | 0.28 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 394 | 427 | 9.4404 | IPR019734 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 52 | 9.312009 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56440.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021758808.1 | putative F-box/kelch-repeat protein At1g15680 [Chenopodium quinoa] | 0 |
| Q9LPM2 | F-box protein At1g49990 OS=Arabidopsis thaliana OX=3702 GN=At1g49990 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LYG0 | TPR_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology