Basic Information
Locus ID:
CQ.Regalona.r1.4AG0021550
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RNA polymerase II-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 62840328 | 62842644 | - | CQ.Regalona.r1.4AG0021550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 45,017.08 Da | 43.33 | 77.83 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48452 | TPR-like | 325 | 396 | 2.53E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 322 | 396 | 1.1E-19 | IPR011990 |
| SMART | SM00028 | tpr_5 | 357 | 390 | 1.2E-5 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 357 | 390 | 9.1749 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56440.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021858440.1 | uncharacterized protein LOC110797641 [Spinacia oleracea] | 0 |
| TrEMBL | A0A803LYJ0 | TPR_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology