Basic Information
Locus ID:
CQ.Regalona.r1.4AG0021520
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 62800085 | 62803154 | + | CQ.Regalona.r1.4AG0021520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 52,283.29 Da | 38.87 | 86.27 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 47 | 2.8E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 61 | 1.01E-12 | IPR036047 |
| SUPERFAMILY | SSF48452 | TPR-like | 415 | 459 | 1.24E-8 | IPR011990 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 49 | 5.5E-7 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 410 | 461 | 7.8E-11 | IPR011990 |
| SMART | SM00028 | tpr_5 | 415 | 448 | 2.4E-4 | IPR019734 |
| SMART | SM00256 | fbox_2 | 10 | 49 | 5.4E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 50 | 9.629941 | IPR001810 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 415 | 448 | 8.4079 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15680.1 | F-box family protein. | 0 |
| RefSeq | XP_021755534.1 | putative F-box/kelch-repeat protein At1g15680 [Chenopodium quinoa] | 0 |
| Q9LMR4 | Putative F-box/kelch-repeat protein At1g15680 OS=Arabidopsis thaliana OX=3702 GN=At1g15680 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803LYJ3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology