Basic Information
Locus ID:
CQ.Regalona.r1.4AG0020140
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 60328131 | 60336166 | - | CQ.Regalona.r1.4AG0020140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 104,482.70 Da | 48.96 | 69.07 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 561 | 597 | 1.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 485 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 602 | 639 | 8.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 448 | 778 | 5.19E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 441 | 800 | 1.5E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 559 | 597 | 8.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 447 | 486 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 733 | 774 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 600 | 639 | 3.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 687 | 732 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 642 | 680 | 2.9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 606 | 640 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 566 | 606 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 454 | 495 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 566 | 600 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 606 | 640 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 454 | 487 | 10.363778 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 584 | 598 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 473 | 487 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 584 | 598 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 626 | 640 | 2.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 836 | 858 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 858 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| Coils | Coil | Coil | 2 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021726087.1 | uncharacterized protein LOC110693240 isoform X1 [Chenopodium quinoa] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MHA0 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology