Basic Information
Locus ID:
CQ.Regalona.r1.4AG0019630
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 59275674 | 59282852 | - | CQ.Regalona.r1.4AG0019630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 95,828.77 Da | 53.32 | 81.93 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 725 | 760 | 8.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 625 | 659 | 4.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 534 | 862 | 9.77E-50 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 61 | 324 | 1.56E-17 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 64 | 326 | 1.9E-22 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 512 | 865 | 1.1E-115 | IPR015943 |
| SMART | SM00220 | serkin_6 | 13 | 316 | 0.0012 | IPR000719 |
| SMART | SM00320 | WD40_4 | 769 | 808 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 819 | 863 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 722 | 760 | 8.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 616 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 619 | 659 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 566 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 679 | 718 | 0.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 626 | 661 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 316 | 10.478254 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 626 | 661 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 729 | 762 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 729 | 762 | 10.521959 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 747 | 761 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 603 | 617 | 6.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 747 | 761 | 6.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 646 | 660 | 6.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 329 | 349 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_021773674.1 | protein SPA1-RELATED 3-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LVC8 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology