halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.4AG0018280

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4A	56372039	56376890	+	CQ.Regalona.r1.4AG0018280

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.82	34,813.75 Da	42.81	89.93	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	17	55	4.8E-6	IPR001810
SUPERFAMILY	SSF52047	RNI-like	120	220	4.97E-5	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	21	248	1.1E-8	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10268 (F-box and leucine-rich repeat protein 2/20)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021773805.1	uncharacterized protein LOC110737764 [Chenopodium quinoa]	0
TrEMBL	A0A803LVP6	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	3	gene_12150, gene_4483, gene_7164
Amaranthaceae	Atriplex hortensis	9	Ah004682, Ah016056, Ah032331, Ah032336, Ah034082, Ah034094 ... Ah034101, Ah034102, Ah034103
Amaranthaceae	Beta vulgaris	2	BVRB_1g000880, BVRB_9g216740
Amaranthaceae	Salicornia bigelovii	13	Sbi_jg40828, Sbi_jg40829, Sbi_jg61155, Sbi_jg61156 ... Sbi_jg61162, Sbi_jg61163, Sbi_jg61164, Sbi_jg61169, Sbi_jg61182, Sbi_jg61188, Sbi_jg61194, Sbi_jg61200, Sbi_jg61206
Amaranthaceae	Salicornia europaea	3	Seu_jg22918, Seu_jg22926, Seu_jg22927
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022496
Amaranthaceae	Suaeda glauca	9	Sgl23009, Sgl28119, Sgl32537, Sgl37813, Sgl70843, Sgl70846 ... Sgl74440, Sgl74443, Sgl74444
Amaranthaceae	Chenopodium album	16	gene:ENSEOMG00000011497, gene:ENSEOMG00000016296 ... gene:ENSEOMG00000018532, gene:ENSEOMG00000027970, gene:ENSEOMG00000036621, gene:ENSEOMG00000037812, gene:ENSEOMG00000038191, gene:ENSEOMG00000038282, gene:ENSEOMG00000039299, gene:ENSEOMG00000039667, gene:ENSEOMG00000040171, gene:ENSEOMG00000040941, gene:ENSEOMG00000042038, gene:ENSEOMG00000043621, gene:ENSEOMG00000048844, gene:ENSEOMG00000050358
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.1BG0002070, CQ.Regalona.r1.2BG0007820 ... CQ.Regalona.r1.4AG0013450, CQ.Regalona.r1.4AG0018280, CQ.Regalona.r1.4AG0018320, CQ.Regalona.r1.4AG0018370, CQ.Regalona.r1.4AG0018400, CQ.Regalona.r1.4BG0018870, CQ.Regalona.r1.9AG0004650, CQ.Regalona.r1.9AG0004690, CQ.Regalona.r1.9AG0004730, CQ.Regalona.r1.9BG0017570
Salicaceae	Populus euphratica	1	populus_peu30353