halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.4AG0016810

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4A	50694635	50697419	+	CQ.Regalona.r1.4AG0016810

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.92	11,257.64 Da	13.05	101.89	0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	50	103	1.33E-6	IPR011009
SUPERFAMILY	SSF50998	Quinoprotein alcohol dehydrogenase-like	20	70	1.67E-10	IPR011047
Gene3D	G3DSA:2.130.10.10	-	9	94	4.1E-10	IPR015943

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G47070.1	Protein kinase superfamily protein.
RefSeq	XP_003574025.1	pre-mRNA-processing factor 19 [Brachypodium distachyon]
Swiss-Prot	Q9AV81	Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1
TrEMBL	A0A803LW39	Pre-mRNA-processing factor 19 OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0016810, CQ.Regalona.r1.7AG0014820
Brassicaceae	Schrenkiella parvula	1	SpUn0341_0010.v2.2