Basic Information
Locus ID:
CQ.Regalona.r1.4AG0015770
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 42384631 | 42397771 | - | CQ.Regalona.r1.4AG0015770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 97,974.95 Da | 63.84 | 67.40 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 805 | 845 | 1.21549E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 803 | 850 | 6.8E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 805 | 851 | 2.78E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 787 | 856 | 1.5E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 806 | 845 | 10.733671 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 85 | - | - |
| Coils | Coil | Coil | 737 | 757 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021718873.1 | uncharacterized protein LOC110686567 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803NAQ2 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology