Basic Information
Locus ID:
CQ.Regalona.r1.4AG0012060
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 17062057 | 17070420 | + | CQ.Regalona.r1.4AG0012060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 74,207.09 Da | 55.10 | 65.44 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 21 | 50 | 5.68625E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 376 | 505 | 4.54268E-65 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 388 | 496 | 3.2E-34 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 181 | 351 | 5.8E-50 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 229 | 512 | 6.4E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 53 | 2.91E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 11 | 59 | 1.8E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 366 | 537 | 1.1E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 134 | 365 | 3.4E-89 | IPR027417 |
| SMART | SM00487 | ultradead3 | 176 | 379 | 2.0E-63 | IPR014001 |
| SMART | SM00456 | ww_5 | 19 | 52 | 3.1E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 416 | 496 | 1.3E-34 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 11.0338 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 391 | 535 | 26.064575 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 188 | 362 | 29.654217 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 157 | 185 | 11.160657 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 308 | 316 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 83 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021737705.1 | ATP-dependent RNA helicase-like protein DB10 [Chenopodium quinoa] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803NBD2 | DEAD-box ATP-dependent RNA helicase 46 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology