Basic Information
Locus ID:
CQ.Regalona.r1.4AG0009790
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 11077377 | 11082857 | + | CQ.Regalona.r1.4AG0009790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 69,766.51 Da | 50.35 | 93.88 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 86 | 131 | 1.2E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 26 | 66 | 1.9E-18 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 60 | 1.57E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 88 | 553 | 1.96E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 65 | 595 | 1.3E-179 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 24 | 64 | 3.7E-19 | - |
| SMART | SM00367 | LRR_CC_2 | 307 | 331 | 610.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 499 | 523 | 69.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 174 | 198 | 650.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 390 | 414 | 0.47 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 123 | 147 | 25.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 148 | 173 | 320.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 28 | 69 | 2.1E-5 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021773054.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Chenopodium quinoa] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KPI2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology