Basic Information
Locus ID:
CQ.Regalona.r1.4AG0009140
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 10119722 | 10120465 | + | CQ.Regalona.r1.4AG0009140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 17,871.19 Da | 30.07 | 84.30 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 8 | 51 | 5.98057E-19 | - |
| Pfam | PF13639 | Ring finger domain | 8 | 51 | 1.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 56 | 5.81E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 59 | 3.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 9 | 50 | 4.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 9 | 51 | 12.489278 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27420.1 | carbon/nitrogen insensitive 1. Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings. | 0 |
| RefSeq | XP_021771794.1 | E3 ubiquitin-protein ligase ATL31-like [Chenopodium quinoa] | 0 |
| Q8LGA5 | E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KPB8 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17018, Sbi_jg17019, Sbi_jg61568, Sbi_jg61569 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg298, Seu_jg299 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008347 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0009140 |