Basic Information
Locus ID:
CQ.Regalona.r1.4AG0008880
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 9711579 | 9721740 | - | CQ.Regalona.r1.4AG0008880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 105,955.09 Da | 53.95 | 75.38 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 428 | 465 | 0.28 | IPR001680 |
| Pfam | PF12490 | Breast carcinoma amplified sequence 3 | 514 | 686 | 1.1E-45 | IPR022175 |
| Pfam | PF00400 | WD domain, G-beta repeat | 369 | 395 | 0.0052 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 170 | 465 | 5.86E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 53 | 502 | 6.1E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 365 | 405 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 179 | 214 | 84.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 423 | 466 | 4.7 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 931 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 836 | 870 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 945 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54710.1 | homolog of yeast autophagy 18 (ATG18) H. | 0 |
| RefSeq | XP_021772968.1 | autophagy-related protein 18h-like [Chenopodium quinoa] | 0 |
| Q8H1Q5 | Autophagy-related protein 18h OS=Arabidopsis thaliana OX=3702 GN=ATG18H PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KP92 | BCAS3 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg16106, jg35256, jg35257, jg8837, jg8838 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12029, gene_6256 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005828 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g083240, BVRB_6g148330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16968, Sbi_jg61502 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg235 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00008300, GOSA_00008302, GOSA_00008303, GOSA_00008304 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24693, Sgl24694, Sgl29848, Sgl29849 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009908, gene:ENSEOMG00000029642 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0008880, CQ.Regalona.r1.4BG0009000 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30011370, pistato.v30086540 |
| Apiaceae | Apium graveolens | 2 | Ag1G00445, Ag6G02951 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G017340, scaffold006566G000130 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710951, gene-LOC103721033 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.929.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G23316, Ftri18G01868 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03380.1, AT1G54710.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006706m.g.v1.0, Thhalv10023243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02380.v2.2, SpUN0002_0210.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018510.2N, BniB06g047430.2N, BniB07g044760.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1639, Ceq06G2302 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G1699, Cgl06G2420 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g05160, gene.Cymno04g05170 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6291, nbisL1-mrna-7819 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2369, evm.TU.LG04.236 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008159, Pov_00024800 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06863 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2513, BH05.2592, CH05.2702 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0373620, gene-QOZ80_5BG0422650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0062840.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013323 |
| Poaceae | Oryza coarctata | 1 | Oco10G009240 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g33610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G140400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505196, Pt_Chr0506210 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G020790, Chr12G017210, Chr18G008920, Chr22G008730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G422000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037940, gene_TRIDC1BG043140 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G254200.1, TraesCS1B02G264000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287690_P001, Zm00001eb349780_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26839, Zma_g28225 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.589, evm.TU.LG18.1193, evm.TU.LG20.688 ... |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g10850, gene.Posoc01g10860, gene.Posoc03g10700 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.257, evm.TU.Scaffold_5_RagTag.929 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-21345, nbisL1-mrna-7952 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19924, nbisL1-mrna-4558, nbisL1-mrna-7719 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18429, nbisL1-mrna-5317 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.545, evm.TU.utg000006l.267 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00009508, Maker00011195, Maker00013868 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10026, nbisL1-mrna-1529, nbisL1-mrna-7785 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-230, nbisL1-mrna-5180, nbisL1-mrna-7549 |
| Salicaceae | Populus euphratica | 2 | populus_peu13465, populus_peu15806 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645193 |
| Solanaceae | Solanum chilense | 1 | SOLCI002883500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007355 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12996, gene_16982 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2373, TC06G0795 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20390.v3.1 |