Basic Information
Locus ID:
CQ.Regalona.r1.4AG0008530
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 9226261 | 9233003 | - | CQ.Regalona.r1.4AG0008530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 105,415.70 Da | 57.56 | 42.75 | -1.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 413 | 439 | 6.3E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 378 | 406 | 1.0E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 371 | 407 | 3.18E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 409 | 440 | 9.6E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 370 | 408 | 8.1E-16 | - |
| SMART | SM00547 | zf_4 | 380 | 404 | 8.0E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 413 | 437 | 2.2E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 378 | 407 | 10.240537 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 411 | 440 | 9.721095 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 415 | 434 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 382 | 401 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 930 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 904 | 930 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 883 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 740 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 463 | - | - |
| Coils | Coil | Coil | 66 | 93 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021838406.1 | uncharacterized protein LOC110778153 [Spinacia oleracea] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KP54 | Zinc finger protein VAR3, chloroplastic OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology