Basic Information
Locus ID:
CQ.Regalona.r1.4AG0008270
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 8735057 | 8739958 | - | CQ.Regalona.r1.4AG0008270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 41,049.38 Da | 56.44 | 78.73 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 269 | 1.05E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 350 | 3.6E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 221 | 262 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 178 | 218 | 0.074 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 288 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021772898.1 | autophagy-related protein 18a-like [Chenopodium quinoa] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KP28 | Autophagy-related protein 18a OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology