Basic Information
Locus ID:
CQ.Regalona.r1.4AG0007660
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 7990305 | 8000106 | - | CQ.Regalona.r1.4AG0007660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 121,146.39 Da | 38.75 | 83.44 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 484 | 0.019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 344 | 659 | 1.33E-40 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 800 | 1060 | 8.93E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 564 | 677 | 1.2E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 302 | 563 | 1.2E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 929 | 1070 | 1.2E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 701 | 928 | 3.9E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 443 | 484 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 1.6 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.9E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 830 | 870 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 437 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 530 | 573 | 97.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 785 | 827 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 962 | 1004 | 24.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 486 | 527 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 873 | 912 | 0.0044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1018 | 1059 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.007 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 880 | 921 | 11.343905 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.469481 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 594 | 625 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 386 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.767425 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 880 | 915 | 9.019239 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 471 | 485 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1062 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1077 | 1098 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021772817.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KNW6 | Topless-related protein 3-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology