Basic Information
Locus ID:
CQ.Regalona.r1.4AG0007300
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 7598807 | 7604142 | - | CQ.Regalona.r1.4AG0007300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 75,256.60 Da | 46.53 | 78.76 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 427 | 601 | 3.9003E-58 | - |
| CDD | cd17920 | DEXHc_RecQ | 222 | 426 | 3.60051E-93 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 443 | 525 | 1.0E-6 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 230 | 406 | 2.7E-15 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 604 | 672 | 3.0E-12 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 567 | 674 | 6.38E-14 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 238 | 604 | 3.86E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 427 | 676 | 3.1E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 190 | 426 | 2.6E-79 | IPR027417 |
| SMART | SM00487 | ultradead3 | 224 | 435 | 1.4E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 469 | 592 | 4.2E-13 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 222 | 525 | 3.1E-112 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 236 | 419 | 19.663538 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 441 | 632 | 14.601996 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 358 | 367 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 187 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021772774.1 | ATP-dependent DNA helicase Q-like 1 [Chenopodium quinoa] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KNT3 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology