Basic Information
Locus ID:
CQ.Regalona.r1.4AG0005550
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 5610873 | 5616268 | + | CQ.Regalona.r1.4AG0005550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 68,994.27 Da | 43.94 | 87.31 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 12 | 55 | 2.3E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 69 | 1.44E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 82 | 1.1E-6 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 4.0E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 54 | 10.928167 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 385 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39450.1 | F-box family protein. | 0 |
| RefSeq | XP_021772574.1 | F-box protein At5g39450-like [Chenopodium quinoa] | 0 |
| Q8RWD6 | F-box protein At5g39450 OS=Arabidopsis thaliana OX=3702 GN=At5g39450 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KNA7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19518 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11867 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005447 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17670, Sbi_jg62346 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg916 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007314 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24014, Sgl29195 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010309, gene:ENSEOMG00000028310 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0005550, CQ.Regalona.r1.4BG0005540 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30201750 |
| Apiaceae | Apium graveolens | 1 | Ag11G04767 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G020290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112985 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2762.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G17504 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT5G39450.1, AT5G39460.1, AT5G39480.1, AT5G39490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027700m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp7g02470.v2.2, Sp7g02490.v2.2, Sp7g02520.v2.2 ... |
| Brassicaceae | Brassica nigra | 6 | BniB01g023640.2N, BniB01g028090.2N, BniB01g028130.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1691 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1753 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0115s00015.v1.0 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7233 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.908 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13831, Lb6G29927 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.35, BH01.1430, CH08.36 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0614440, gene-QOZ80_8BG0641940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0706850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033633 |
| Poaceae | Oryza coarctata | 1 | Oco16G000340 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G005200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104058, Pt_Chr0401260, Pt_Chr0702110 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G013840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G556500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG045450, gene_TRIDC7BG037410 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G324600.1, TraesCS7B02G225100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb174460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51969 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22331 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1479, evm.TU.LG20.400 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g02190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1493 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14828 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22655 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.913 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007248 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23072 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2926 |
| Salicaceae | Populus euphratica | 2 | populus_peu13691, populus_peu22851 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627642 |
| Solanaceae | Solanum chilense | 1 | SOLCI000394500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018139 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17028 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1373 |