Basic Information
Locus ID:
CQ.Regalona.r1.4AG0004840
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 4766054 | 4771039 | - | CQ.Regalona.r1.4AG0004840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 53,234.00 Da | 45.76 | 81.88 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 120 | 437 | 2.4E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 82 | 475 | 1.12E-123 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 73 | 473 | 1.9E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 227 | 247 | 8000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 277 | 298 | 4.6 | IPR006626 |
| SMART | SM00710 | pbh1 | 330 | 351 | 0.77 | IPR006626 |
| SMART | SM00710 | pbh1 | 359 | 380 | 7100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 250 | 276 | 350.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 307 | 320 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021772474.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KN40 | Polygalacturonase At1g80170 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology