halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.4AG0004540

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: glycerol-3-phosphate acyltransferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4A	4494643	4510802	-	CQ.Regalona.r1.4AG0004540

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.06	109,234.86 Da	33.39	98.22	0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06551	LPLAT	333	494	1.21605E-18	-
Pfam	PF01553	Acyltransferase	769	862	3.4E-8	IPR002123
Pfam	PF01553	Acyltransferase	325	422	2.0E-8	IPR002123
SUPERFAMILY	SSF69593	Glycerol-3-phosphate (1)-acyltransferase	686	962	5.49E-28	-
SUPERFAMILY	SSF69593	Glycerol-3-phosphate (1)-acyltransferase	236	517	9.15E-28	-
SMART	SM00563	plsc_2	773	875	7.0E-10	IPR002123
SMART	SM00563	plsc_2	332	433	1.3E-12	IPR002123

Gene Ontology

Molecular Function:

GO:0016746 (acyltransferase activity)

KEGG Pathway

KO Term:

K13508 (glycerol-3-phosphate acyltransferase [EC:2.3.1.15 2.3.1.198])

Pathway:

ko00561 (Glycerolipid metabolism) map00561 (Glycerolipid metabolism) ko00564 (Glycerophospholipid metabolism) map00564 (Glycerophospholipid metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00089 (Triacylglycerol biosynthesis)

Reaction:

R00851 (sn-Glycerol 3-phosphate + Acyl-CoA <=> 1-Acyl-sn-glycerol 3-phosphate + CoA) R06872 (sn-Glycerol 3-phosphate + Acyl-CoA <=> 2-Acyl-sn-glycerol 3-phosphate + CoA) R09380 (Acyl-[acyl-carrier protein] + sn-Glycerol 3-phosphate <=> 1-Acyl-sn-glycerol 3-phosphate + Acyl-carrier protein)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G02390.1	glycerol-3-phosphate acyltransferase 2. Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.
RefSeq	XP_021772438.1	probable glycerol-3-phosphate acyltransferase 2 [Chenopodium quinoa]
Swiss-Prot	Q9FZ22	Probable glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=GPAT2 PE=2 SV=1
TrEMBL	A0A803KN11	PlsC domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg19250, jg21277
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10242, gene_13427, gene_17054
Amaranthaceae	Atriplex hortensis	3	Ah000063, Ah005336, Ah038011
Amaranthaceae	Beta vulgaris	3	BVRB_4g080160, BVRB_5g122190, BVRB_9g205920
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg31258, Sbi_jg50977, Sbi_jg58009, Sbi_jg60784
Amaranthaceae	Salicornia europaea	2	Seu_jg22501, Seu_jg25644
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00004515, GOSA_00004516, GOSA_00007425, GOSA_00015803
Amaranthaceae	Suaeda glauca	10	Sgl24125, Sgl24126, Sgl24173, Sgl24174, Sgl29307, Sgl29308 ... Sgl54582, Sgl59918, Sgl78377, Sgl80878
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015895, gene:ENSEOMG00000021565 ... gene:ENSEOMG00000022611, gene:ENSEOMG00000036570, gene:ENSEOMG00000043519, gene:ENSEOMG00000050934
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.4AG0004540, CQ.Regalona.r1.4BG0004550 ... CQ.Regalona.r1.4BG0004560, CQ.Regalona.r1.5AG0027390, CQ.Regalona.r1.5BG0029000, CQ.Regalona.r1.9AG0003670, CQ.Regalona.r1.9BG0018740
Anacardiaceae	Pistacia vera	5	pistato.v30007850, pistato.v30013550, pistato.v30040480 ... pistato.v30080620, pistato.v30080960
Apiaceae	Apium graveolens	5	Ag10G01762, Ag10G01764, Ag10G01765, Ag11G03486, Ag9G02300
Arecaceae	Cocos nucifera	7	COCNU_01G000970, COCNU_02G004630, COCNU_04G011370 ... COCNU_12G003170, COCNU_14G004660, COCNU_16G004770, COCNU_16G004780
Arecaceae	Phoenix dactylifera	6	gene-LOC103701014, gene-LOC103701751, gene-LOC103704589 ... gene-LOC103709714, gene-LOC103719324, gene-LOC103721029
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.3044.V1.1, AsparagusV1_05.200.V1.1 ... AsparagusV1_05.201.V1.1, AsparagusV1_05.3375.V1.1, AsparagusV1_05.816.V1.1, AsparagusV1_07.1223.V1.1, AsparagusV1_07.1226.V1.1, AsparagusV1_07.1227.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G09852, Ftri17G12757, Ftri18G31644, Ftri9G13618
Brassicaceae	Arabidopsis thaliana	3	AT1G02390.1, AT1G06520.1, AT4G01950.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007168m.g.v1.0, Thhalv10007347m.g.v1.0 ... Thhalv10028577m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g01470.v2.2, Sp1g05280.v2.2, Sp6g01830.v2.2
Brassicaceae	Brassica nigra	4	BniB03g037910.2N, BniB06g044110.2N, BniB08g040460.2N ... BniB08g044390.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2212, Ceq06G1100, Ceq09G1982
Casuarinaceae	Casuarina glauca	3	Cgl02G2303, Cgl06G1141, Cgl09G2164
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g00300
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g31630, gene.Thate04g16620, gene.Thate05g14550
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10250, nbisL1-mrna-6787
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.1428, evm.TU.LG04.481, evm.TU.LG06.997
Plantaginaceae	Plantago ovata	3	Pov_00003509, Pov_00004251, Pov_00037888
Plumbaginaceae	Limonium bicolor	2	Lb4G21599, Lb4G21620
Poaceae	Echinochloa crus-galli	20	AH01.470, AH02.1007, AH02.2430, AH04.2217, AH05.3191 ... AH05.3744, AH08.1090, BH01.269, BH02.1119, BH02.1449, BH02.2546, BH04.2290, BH05.3187, BH05.3796, CH01.104, CH02.1182, CH02.2721, CH04.2621, CH05.3997, CH07.2690
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_1AG0005510, gene-QOZ80_1AG0013950 ... gene-QOZ80_1AG0025640, gene-QOZ80_1BG0054130, gene-QOZ80_1BG0062770, gene-QOZ80_1BG0076120, gene-QOZ80_3AG0209660, gene-QOZ80_3BG0254770, gene-QOZ80_5AG0394060, gene-QOZ80_5AG0400160, gene-QOZ80_5BG0442380, gene-QOZ80_5BG0448830, gene-QOZ80_9AG0692490, gene-QOZ80_9BG0718560
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0117740.1, HORVU.MOREX.r3.3HG0247090.1 ... HORVU.MOREX.r3.3HG0273880.1, HORVU.MOREX.r3.3HG0296680.1, HORVU.MOREX.r3.4HG0417370.1, HORVU.MOREX.r3.5HG0443100.1.CDS1, HORVU.MOREX.r3.5HG0529400.1, HORVU.MOREX.r3.6HG0538810.1
Poaceae	Lolium multiflorum	10	gene-QYE76_001855, gene-QYE76_010708, gene-QYE76_050277 ... gene-QYE76_053433, gene-QYE76_054016, gene-QYE76_054021, gene-QYE76_054031, gene-QYE76_060457, gene-QYE76_065529, gene-QYE76_065562
Poaceae	Oryza coarctata	15	Oco01G006750, Oco01G008760, Oco01G015250, Oco02G007030 ... Oco02G008980, Oco02G009760, Oco02G015510, Oco05G028250, Oco06G029140, Oco09G005960, Oco15G004000, Oco21G009810, Oco22G011080, Oco23G008500, Oco24G008100
Poaceae	Oryza sativa	9	LOC_Os01g14900.1, LOC_Os01g19390.1, LOC_Os01g22560.1 ... LOC_Os01g22570.1, LOC_Os01g44069.1, LOC_Os03g61720.1, LOC_Os05g20100.1, LOC_Os11g45400.1, LOC_Os12g37600.1
Poaceae	Paspalum vaginatum	10	gene-BS78_01G022700, gene-BS78_03G102300, gene-BS78_K072800 ... gene-BS78_03G130600, gene-BS78_03G204000, gene-BS78_05G242000, gene-BS78_05G247800, gene-BS78_06G296800, gene-BS78_08G106000, gene-BS78_K147700
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0103470, Pt_Chr0106004, Pt_Chr0200110, Pt_Chr0206928 ... Pt_Chr0501392, Pt_Chr0603101
Poaceae	Sporobolus alterniflorus	14	Chr01G022730, Chr02G014840, Chr03G002190, Chr03G011670 ... Chr04G017110, Chr05G018890, Chr06G017740, Chr07G013910, Chr08G002880, Chr08G011850, Chr16G004050, Chr17G003730, Chr22G011880, Chr27G007260
Poaceae	Thinopyrum elongatum	12	Tel2E01G275300, Tel3E01G263200, Tel3E01G389100 ... Tel3E01G389400, Tel3E01G543000, Tel4E01G226600, Tel4E01G638000, Tel5E01G171200, Tel5E01G791500, Tel6E01G140800, Tel6E01G141300, Tel7E01G875300
Poaceae	Triticum dicoccoides	16	gene_TRIDC2AG016630, gene_TRIDC2BG020240 ... gene_TRIDC3AG019400, gene_TRIDC3AG034090, gene_TRIDC3AG048970, gene_TRIDC3BG024680, gene_TRIDC3BG038580, gene_TRIDC3BG055170, gene_TRIDC4AG027610, gene_TRIDC4AG053790, gene_TRIDC4BG022850, gene_TRIDC4BG064310, gene_TRIDC5AG013250, gene_TRIDC5BG015320, gene_TRIDC6BG000510, gene_TRIDC7BG066560
Poaceae	Triticum aestivum	26	TraesCS2A02G134500.1, TraesCS2B02G158000.1 ... TraesCS2D02G136700.1, TraesCS3A02G146100.1, TraesCS3A02G227400.1, TraesCS3A02G339700.1, TraesCS3B02G173200.1, TraesCS3B02G257000.2, TraesCS3B02G371300.1, TraesCS3D02G155000.1, TraesCS3D02G225300.1, TraesCS3D02G333200.1, TraesCS4A02G171600.1, TraesCS4A02G361400.1, TraesCS4D02G143600.1, TraesCS5A02G086200.1.cds1, TraesCS5B02G092200.1, TraesCS5B02G511500.1, TraesCS5D02G099700.1.cds1, TraesCS5D02G512000.1, TraesCS7B02G419500.1, TraesCS7D02G498800.1, TraesCSU02G033700.1, TraesCSU02G069100.1, TraesCSU02G241800.1.cds1, TraesCSU02G250600.1.cds1
Poaceae	Zea mays	6	Zm00001eb063420_P001, Zm00001eb115970_P001 ... Zm00001eb127520_P001, Zm00001eb136910_P001, Zm00001eb159140_P001, Zm00001eb358940_P001
Poaceae	Zoysia japonica	9	nbis-gene-13464, nbis-gene-16657, nbis-gene-30287 ... nbis-gene-30288, nbis-gene-30336, nbis-gene-32411, nbis-gene-45981, nbis-gene-50576, nbis-gene-53871
Poaceae	Zoysia macrostachya	7	Zma_g10708, Zma_g19147, Zma_g2441, Zma_g2442, Zma_g25978 ... Zma_g26579, Zma_g7850
Portulacaceae	Portulaca oleracea	8	evm.TU.LG02.1290, evm.TU.LG08.1294, evm.TU.LG08.731 ... evm.TU.LG09.679, evm.TU.LG18.1547, evm.TU.LG20.335, evm.TU.LG22.1384, evm.TU.LG22.194
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13950, gene.Posoc04g00830
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_2_RagTag.2112, evm.TU.Scaffold_5_RagTag.1773 ... evm.TU.Scaffold_5_RagTag.772, evm.TU.Scaffold_5_RagTag.773, evm.TU.Scaffold_9_RagTag.729
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10561, nbisL1-mrna-12268, nbisL1-mrna-21491 ... nbisL1-mrna-2870, nbisL1-mrna-2926
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12187, nbisL1-mrna-1325, nbisL1-mrna-20030 ... nbisL1-mrna-7786
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10759, nbisL1-mrna-11414, nbisL1-mrna-18561
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000006l.228, evm.TU.utg000003l.641 ... evm.TU.utg000006l.1036, evm.TU.utg000006l.580
Rhizophoraceae	Kandelia obovata	3	Maker00009641, Maker00013803, Maker00014149
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10131, nbisL1-mrna-10568, nbisL1-mrna-1626 ... nbisL1-mrna-21991
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-15708, nbisL1-mrna-16107, nbisL1-mrna-5312 ... nbisL1-mrna-7407
Salicaceae	Populus euphratica	2	populus_peu14965, populus_peu31361
Solanaceae	Lycium barbarum	1	gene-LOC132616778
Solanaceae	Solanum chilense	1	SOLCI006321900
Solanaceae	Solanum pennellii	1	gene-LOC107024606
Tamaricaceae	Reaumuria soongarica	2	gene_16623, gene_17296
Tamaricaceae	Tamarix chinensis	2	TC06G0034, TC07G1762
Zosteraceae	Zostera marina	1	Zosma02g21020.v3.1