Basic Information
Locus ID:
CQ.Regalona.r1.4AG0002680
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 2824253 | 2827320 | - | CQ.Regalona.r1.4AG0002680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 38,336.62 Da | 63.95 | 55.78 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 212 | 253 | 2.15438E-25 | - |
| Pfam | PF13639 | Ring finger domain | 211 | 253 | 1.9E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 192 | 259 | 2.65E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 258 | 1.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 212 | 252 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 212 | 253 | 12.135206 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 316 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_021772245.1 | probable E3 ubiquitin-protein ligase RHC1A [Chenopodium quinoa] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KMI6 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology