Basic Information
Locus ID:
CQ.Regalona.r1.4AG0002250
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 2407631 | 2421481 | - | CQ.Regalona.r1.4AG0002250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 103,995.74 Da | 52.65 | 75.39 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 98 | 197 | 4.16739E-12 | - |
| CDD | cd00159 | RhoGAP | 258 | 395 | 1.01774E-34 | - |
| Pfam | PF00169 | PH domain | 97 | 201 | 3.5E-13 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 258 | 402 | 5.0E-31 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 689 | 769 | 2.7E-21 | IPR025757 |
| SUPERFAMILY | SSF50729 | PH domain-like | 90 | 206 | 2.68E-18 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 258 | 452 | 5.3E-34 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 227 | 451 | 9.3E-42 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 87 | 204 | 7.3E-18 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 255 | 446 | 4.6E-28 | IPR000198 |
| SMART | SM00233 | PH_update | 96 | 204 | 2.7E-16 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 95 | 202 | 15.7531 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 249 | 449 | 30.06636 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 851 | - | - |
| Coils | Coil | Coil | 679 | 720 | - | - |
| Coils | Coil | Coil | 738 | 772 | - | - |
| Coils | Coil | Coil | 278 | 298 | - | - |
| Coils | Coil | Coil | 890 | 917 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_021772176.1 | rho GTPase-activating protein 7-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KMD9 | Rho GTPase-activating protein 7-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology