Basic Information
Locus ID:
CQ.Regalona.r1.4AG0002090
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Integrator complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 2218489 | 2231447 | - | CQ.Regalona.r1.4AG0002090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 164,999.94 Da | 40.27 | 105.87 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06105 | ScCit1-2_like | 1042 | 1467 | 0.0 | - |
| Pfam | PF10189 | Integrator complex subunit 3 | 207 | 430 | 3.9E-89 | IPR019333 |
| Pfam | PF00285 | Citrate synthase, C-terminal domain | 1080 | 1458 | 2.2E-101 | IPR002020 |
| SUPERFAMILY | SSF48256 | Citrate synthase | 1044 | 1468 | 4.19E-145 | IPR036969 |
| Gene3D | G3DSA:1.10.580.10 | Citrate Synthase, domain 1 | 1046 | 1458 | 1.4E-193 | IPR016142 |
| Gene3D | G3DSA:1.10.230.10 | - | 1312 | 1426 | 1.4E-193 | IPR016143 |
| TIGRFAM | TIGR01793 | cit_synth_euk: citrate (Si)-synthase, eukaryotic | 1040 | 1465 | 8.0E-246 | IPR010109 |
| ProSitePatterns | PS00480 | Citrate synthase signature. | 1352 | 1364 | - | IPR019810 |
| PRINTS | PR00143 | Citrate synthase signature | 1345 | 1365 | 3.7E-51 | IPR002020 |
| PRINTS | PR00143 | Citrate synthase signature | 1214 | 1227 | 3.7E-51 | IPR002020 |
| PRINTS | PR00143 | Citrate synthase signature | 1427 | 1441 | 3.7E-51 | IPR002020 |
| PRINTS | PR00143 | Citrate synthase signature | 1285 | 1313 | 3.7E-51 | IPR002020 |
| PRINTS | PR00143 | Citrate synthase signature | 1406 | 1422 | 3.7E-51 | IPR002020 |
| PRINTS | PR00143 | Citrate synthase signature | 1262 | 1277 | 3.7E-51 | IPR002020 |
| Coils | Coil | Coil | 1043 | 1063 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44350.1 | Citrate synthase family protein. encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA. | 0 |
| RefSeq | XP_021751525.1 | integrator complex subunit 3-like [Chenopodium quinoa] | 0 |
| O80433 | Citrate synthase, mitochondrial OS=Daucus carota OX=4039 GN=CS PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KMC3 | Citrate synthase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15626, jg4026 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_11594, gene_5093, gene_5095, gene_9976 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005060 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17843, Sbi_jg62468 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1042 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007191, GOSA_00007198 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl59164 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000028608, gene:ENSEOMG00000029681 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0002090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30051110 |
| Apiaceae | Apium graveolens | 1 | Ag1G01028 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006700 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714943, gene-LOC120103817 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.728.V1.1, AsparagusV1_09.1319.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21228 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G14590.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017599m.g.v1.0, Thhalv10027440m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g021850.2N, BniB08g074420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0935 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0934 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05730 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08510 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-396 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.151 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.422, BH04.454, CH04.447 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671340, gene-QOZ80_9BG0694820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349060.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064719 |
| Poaceae | Oryza coarctata | 2 | Oco21G002170, Oco22G003000 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g07030.1, LOC_Os11g40750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G078100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G020590, Chr16G010160, Chr17G009250, Chr31G001630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G176100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG032800, gene_TRIDC4BG017020 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G206300.1.cds1, TraesCS4D02G107300.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb091720_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27144 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18472 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2469, evm.TU.LG17.1513 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g19850, gene.Posoc05g19860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1002 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19605, nbisL1-mrna-30014 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3511 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16366 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.255 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015263 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4501 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20793 |
| Salicaceae | Populus euphratica | 1 | populus_peu01765 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132601549 |
| Solanaceae | Solanum chilense | 1 | SOLCI002970700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021634 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6559 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1477 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11590.v3.1 |