Basic Information
Locus ID:
CQ.Regalona.r1.4AG0001590
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 1741780 | 1754184 | + | CQ.Regalona.r1.4AG0001590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 108,871.38 Da | 36.58 | 86.83 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 52 | 319 | 2.41808E-134 | - |
| Pfam | PF13499 | EF-hand domain pair | 438 | 504 | 5.8E-13 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 53 | 320 | 2.0E-72 | IPR000719 |
| Pfam | PF13833 | EF-hand domain pair | 380 | 429 | 5.6E-5 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 349 | 529 | 2.67E-42 | IPR011992 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 784 | 936 | 2.67E-9 | IPR029044 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 51 | 321 | 6.2E-86 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 329 | 506 | 6.7E-50 | - |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 734 | 951 | 5.8E-7 | IPR029044 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 55 | 138 | 2.0E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 139 | 328 | 1.9E-57 | - |
| SMART | SM00054 | efh_1 | 478 | 506 | 1.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 403 | 431 | 0.9 | IPR002048 |
| SMART | SM00054 | efh_1 | 367 | 395 | 0.21 | IPR002048 |
| SMART | SM00220 | serkin_6 | 53 | 320 | 3.2E-100 | IPR000719 |
| SMART | SM00054 | efh_1 | 439 | 467 | 0.0045 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 399 | 434 | 8.962221 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 53 | 320 | 49.855579 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 363 | 398 | 12.309669 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 435 | 470 | 12.867577 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 474 | 509 | 14.206556 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 487 | 499 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 59 | 86 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 448 | 460 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 173 | 185 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 412 | 424 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 836 | 856 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12480.1 | calmodulin-domain protein kinase 7. calmodulin-domain protein kinase CDPK isoform 7 (CPK7) | 0 |
| RefSeq | XP_021772090.1 | calcium-dependent protein kinase 8-like [Chenopodium quinoa] | 0 |
| Q38873 | Calcium-dependent protein kinase 7 OS=Arabidopsis thaliana OX=3702 GN=CPK7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KM73 | Calcium-dependent protein kinase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29239, jg622 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11630 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005002 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072780 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg16549, Sbi_jg18010, Sbi_jg32279, Sbi_jg4924 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1219, Seu_jg12858, Seu_jg27403 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014405 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23840, Sgl29004 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009535, gene:ENSEOMG00000028959 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001590, CQ.Regalona.r1.4BG0001690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30282290 |
| Apiaceae | Apium graveolens | 5 | Ag10G02089, Ag6G00119, AgUnG00662, AgUnG01262, AgUnG01271 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G015290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702047 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2330.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G20632 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G45320.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001485m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g029600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0513 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0535 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12650 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1583 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014915 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08429 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2082, BH06.1925, CH06.2124 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0543400, gene-QOZ80_6BG0496650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0716800.1 |
| Poaceae | Oryza coarctata | 1 | Oco11G011500 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g37430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G172500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400535, Pt_Chr0601868 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G029260, Chr05G006910, Chr10G016730, Chr11G005630 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG050630, gene_TRIDC7BG043290 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G362700.2, TraesCS7B02G266100.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb012290_P001, Zm00001eb084960_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10178, nbis-gene-41160 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30726, Zma_g32968 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1723, evm.TU.LG22.653 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g23540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.169 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19550, nbisL1-mrna-9104 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3952 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22259 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.101 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010548 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8065 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9729 |
| Salicaceae | Populus euphratica | 2 | populus_peu25556, populus_peu27856 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609452 |
| Solanaceae | Solanum chilense | 1 | SOLCI001249300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027134 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25257_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2660 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04120.v3.1 |