Basic Information
Locus ID:
CQ.Regalona.r1.4AG0000540
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 617538 | 624405 | - | CQ.Regalona.r1.4AG0000540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 98,620.25 Da | 37.37 | 76.96 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 420 | 476 | 4.40785E-30 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 421 | 477 | 1.6E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 481 | 843 | 7.7E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 149 | 253 | 1.5E-9 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 308 | 844 | 2.95E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 408 | 479 | 5.68E-15 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 420 | 862 | 2.4E-222 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 82 | 249 | 3.4E-47 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 639 | 810 | 2.4E-222 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 292 | 400 | 9.1E-14 | - |
| SMART | SM00439 | BAH_4 | 145 | 264 | 7.6E-16 | IPR001025 |
| SMART | SM00298 | chromo_7 | 420 | 479 | 1.1E-8 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 489 | 841 | 3.2E-30 | IPR001525 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 21 | 7.0 | - |
| ProSiteProfiles | PS51038 | BAH domain profile. | 145 | 264 | 16.244312 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 421 | 477 | 14.240801 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 309 | 851 | 43.963894 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 444 | 464 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 491 | 503 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 580 | 593 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 534 | 548 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 310 | 326 | 1.8E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021771965.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KLX9 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology