Basic Information
Locus ID:
CQ.Regalona.r1.3BG0026380
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 78255475 | 78257109 | + | CQ.Regalona.r1.3BG0026380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 63,023.27 Da | 50.62 | 78.29 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 14 | 50 | 1.1E-6 | IPR001810 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 319 | 364 | 9.8E-5 | IPR005174 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 71 | 3.53E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 53 | 3.0E-8 | - |
| SMART | SM00256 | fbox_2 | 17 | 57 | 5.8E-4 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 507 | - | - |
| Coils | Coil | Coil | 490 | 510 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021757127.1 | probable F-box protein At1g65740 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LZD6 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_16244, gene_21745, gene_21763, gene_26530 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah008814, Ah008815, Ah008816, Ah008817 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g076820, BVRB_9g224050 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg50516 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl23194, Sgl23396, Sgl23397, Sgl23398, Sgl28512, Sgl28513 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0013410, CQ.Regalona.r1.3AG0025460 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG02.1509, evm.TU.LG02.1510, evm.TU.LG02.1512 ... |