Basic Information
Locus ID:
CQ.Regalona.r1.3BG0025310
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 77038046 | 77042657 | + | CQ.Regalona.r1.3BG0025310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 45,685.86 Da | 31.15 | 100.35 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 50 | 1.7E-10 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 248 | 331 | 2.0E-5 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 72 | 1.07E-13 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 150 | 388 | 6.28E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 47 | 4.1E-11 | - |
| SMART | SM00256 | fbox_2 | 11 | 51 | 5.8E-12 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 146 | 348 | 8.8E-19 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 52 | 11.643516 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_021749008.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9LU24 | Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803LZN5 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_14979, gene_14980, gene_15000, gene_16994, gene_2093 ... |
| Amaranthaceae | Atriplex hortensis | 4 | Ah003124, Ah012204, Ah031133, Ah031136 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26525, Sbi_jg26526, Sbi_jg29415, Sbi_jg34037 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15056, Seu_jg6323 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00000790, GOSA_00000791, GOSA_00000792, GOSA_00011322 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl12017, Sgl15992, Sgl31878, Sgl37156, Sgl46157, Sgl46158 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000022421, gene:ENSEOMG00000034528 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0000690, CQ.Regalona.r1.2BG0028260 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG26.202 |