Basic Information
Locus ID:
CQ.Regalona.r1.3BG0023980
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 75485199 | 75494895 | - | CQ.Regalona.r1.3BG0023980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 82,260.97 Da | 49.34 | 75.73 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 55 | 210 | 5.25905E-32 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 421 | 493 | 3.4E-6 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 421 | 1.0E-13 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 81 | 166 | 1.4E-11 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 16 | 359 | 1.0E-111 | IPR007012 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 360 | 1.31E-64 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 362 | 488 | 1.26E-35 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 16 | 209 | 6.07E-52 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 16 | 358 | 7.0E-163 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 362 | 477 | 6.0E-30 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 7.0E-163 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 527 | - | - |
| Coils | Coil | Coil | 37 | 57 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021744680.1 | nuclear poly(A) polymerase 1-like [Chenopodium quinoa] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MJ40 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology