Basic Information
Locus ID:
CQ.Regalona.r1.3BG0022560
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 73093712 | 73102352 | + | CQ.Regalona.r1.3BG0022560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 174,557.27 Da | 45.85 | 73.62 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 969 | 1051 | 1.69753E-27 | - |
| Pfam | PF00855 | PWWP domain | 965 | 1051 | 9.3E-16 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 963 | 1070 | 6.62E-25 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 959 | 1058 | 2.1E-24 | - |
| SMART | SM00293 | PWWP_4 | 965 | 1026 | 5.1E-9 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 967 | 1028 | 14.11253 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 919 | 940 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1457 | 1473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1377 | 1396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1416 | 1473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1420 | 1447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 899 | 943 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1303 | 1336 | - | - |
| Coils | Coil | Coil | 898 | 918 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021724192.1 | uncharacterized protein LOC110691562 [Chenopodium quinoa] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MAI6 | PWWP domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology