Basic Information
Locus ID:
CQ.Regalona.r1.3BG0020050
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ER-associated misfolded protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 67631891 | 67632793 | - | CQ.Regalona.r1.3BG0020050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 33,370.17 Da | 38.68 | 73.03 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 45 | 217 | 5.6E-65 | IPR004854 |
| SUPERFAMILY | SSF54585 | Cdc48 domain 2-like | 140 | 209 | 3.27E-5 | IPR029067 |
| Gene3D | G3DSA:2.40.40.50 | - | 34 | 140 | 4.4E-35 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 141 | 215 | 8.7E-27 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 291 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_021722021.1 | ubiquitin recognition factor in ER-associated degradation protein 1-like [Chenopodium quinoa] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803LM26 | Ubiquitin fusion degradation protein 1 homolog OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology