Basic Information
Locus ID:
CQ.Regalona.r1.3BG0018760
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 62575712 | 62582043 | - | CQ.Regalona.r1.3BG0018760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 31,859.35 Da | 48.99 | 57.44 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 18 | 98 | 1.1E-20 | IPR008913 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 160 | 202 | 2.6E-6 | IPR018957 |
| Pfam | PF14599 | Zinc-ribbon | 207 | 265 | 1.4E-27 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 159 | 209 | 9.96E-10 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 16 | 87 | 3.14E-18 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 89 | 153 | 3.27E-19 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 235 | 1.4E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 236 | 271 | 1.8E-18 | - |
| SMART | SM00184 | ring_2 | 160 | 202 | 8.9E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 11 | 86 | 25.45882 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 88 | 159 | 31.763662 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 160 | 203 | 11.412309 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021725233.1 | E3 ubiquitin-protein ligase MIEL1-like isoform X3 [Chenopodium quinoa] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MUD8 | E3 ubiquitin-protein ligase MIEL1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology