Basic Information
Locus ID:
CQ.Regalona.r1.3BG0017740
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 58665410 | 58668116 | - | CQ.Regalona.r1.3BG0017740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 89,403.11 Da | 45.24 | 108.72 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 524 | 583 | 2.7E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 678 | 721 | 1.2E-9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 241 | 262 | 0.1 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 72 | 4.0E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 119 | 178 | 1.1E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 264 | 323 | 8.3E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 399 | 740 | 1.6E-54 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 378 | 2.55E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 232 | 2.3E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 480 | 762 | 2.0E-80 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 233 | 479 | 9.1E-56 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 570 | 589 | 37.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 522 | 551 | 86.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 708 | 736 | 120.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 684 | 705 | 170.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 116 | 147 | 700.0 | - |
| SMART | SM00369 | LRR_typ_2 | 238 | 262 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 684 | 707 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 546 | 569 | 48.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 570 | 594 | 4.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 214 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 660 | 683 | 79.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 522 | 544 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 286 | 310 | 48.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 142 | 166 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 708 | 731 | 28.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 524 | 546 | 7.565642 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 710 | 732 | 7.149804 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 570 | 583 | 1.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 455 | 468 | 1.0E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_021741316.1 | leucine-rich repeat receptor protein kinase MSP1-like [Chenopodium quinoa] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803MM93 | LRRNT_2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |