Basic Information
Locus ID:
CQ.Regalona.r1.3BG0014860
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Kinetochore protein ndc80
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 23297913 | 23304027 | + | CQ.Regalona.r1.3BG0014860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 66,294.19 Da | 50.57 | 78.21 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03801 | HEC/Ndc80p family | 57 | 169 | 3.1E-23 | IPR005550 |
| Gene3D | G3DSA:1.10.418.30 | Ncd80 complex, Ncd80 subunit | 53 | 161 | 1.4E-19 | IPR038273 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| Coils | Coil | Coil | 208 | 242 | - | - |
| Coils | Coil | Coil | 484 | 529 | - | - |
| Coils | Coil | Coil | 431 | 472 | - | - |
| Coils | Coil | Coil | 274 | 346 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54630.1 | 0 | |
| RefSeq | XP_021747496.1 | kinetochore protein ndc80-like [Chenopodium quinoa] | 0 |
| Q9M1G5 | Kinetochore protein NDC80 homolog OS=Arabidopsis thaliana OX=3702 GN=NDC80 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MQR8 | Kinetochore protein NDC80 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28420 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20572 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020431 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30104, Sbi_jg43556 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18346 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004123 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66109, Sgl70425 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014956, gene:ENSEOMG00000031529 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015150, CQ.Regalona.r1.3BG0014860 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30124120, pistato.v30124970 |
| Apiaceae | Apium graveolens | 2 | Ag1G00741, Ag4G02164 |
| Arecaceae | Cocos nucifera | 1 | scaffold016572G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698245, gene-LOC103723562 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.395.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | FtriNA02367, FtriNA05310 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07820.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g057320.2N, BniB08g068870.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0700 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0754 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g12690 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0192s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g09990, gene.Thate01g10000, gene.Thate05g04170 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG07.48, evm.TU.LG08.1296, evm.TU.LG10.429 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00001532, Pov_00011649, Pov_00019003, Pov_00028718 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24608 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.1499, AH02.3460, BH02.1574, BH02.3493, CH02.1721 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0670020, gene-QOZ80_9BG0693480 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0526850.1, HORVU.MOREX.r3.5HG0527750.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031192, gene-QYE76_033457 |
| Poaceae | Oryza coarctata | 6 | Oco15G001360, Oco15G001370, Oco15G012980, Oco16G001480 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os08g36490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G138500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102240 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G022140, Chr03G007460, Chr05G013000 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G766000, Tel5E01G775000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG068810, gene_TRIDC5AG069480 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G482600.1, TraesCS5A02G487800.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb040130_P002, Zm00001eb135950_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-51807, nbis-gene-55280, nbis-gene-6526 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10237, Zma_g5972 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.2792, evm.TU.LG05.2201, evm.TU.LG07.1367 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g31050 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1596, evm.TU.Scaffold_2_RagTag.1597 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3690 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20408 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18983 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.351 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005063 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2783 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21817 |
| Salicaceae | Populus euphratica | 1 | populus_peu02549 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598735 |
| Solanaceae | Solanum chilense | 2 | SOLCI000672700, SOLCI002790300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006072 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28562_chr04_-, gene_5923 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G3287, TC02G3349 |
| Zosteraceae | Zostera marina | 1 | Zosma04g20300.v3.1 |