Basic Information
Locus ID:
CQ.Regalona.r1.3BG0013430
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 17675602 | 17678647 | - | CQ.Regalona.r1.3BG0013430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 56,945.06 Da | 47.50 | 72.98 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 234 | 281 | 4.2E-5 | IPR005174 |
| Pfam | PF12937 | F-box-like | 17 | 53 | 9.3E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 94 | 3.14E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 56 | 2.6E-8 | - |
| SMART | SM00256 | fbox_2 | 20 | 61 | 5.0E-4 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 450 | - | - |
| Coils | Coil | Coil | 429 | 449 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021757127.1 | probable F-box protein At1g65740 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LZD6 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_16244, gene_21745, gene_21763, gene_26530 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah008814, Ah008815, Ah008816, Ah008817 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g076820, BVRB_9g224050 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg50516 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl23194, Sgl23396, Sgl23397, Sgl23398, Sgl28512, Sgl28513 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0013410, CQ.Regalona.r1.3AG0025460 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG02.1509, evm.TU.LG02.1510, evm.TU.LG02.1512 ... |