Basic Information
Locus ID:
CQ.Regalona.r1.3BG0012840
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 15476044 | 15486600 | - | CQ.Regalona.r1.3BG0012840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 127,486.95 Da | 65.78 | 54.90 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00268 | DEADc | 508 | 702 | 3.24619E-99 | - |
| CDD | cd18787 | SF2_C_DEAD | 716 | 845 | 6.74896E-61 | - |
| CDD | cd00201 | WW | 23 | 52 | 1.51246E-5 | IPR001202 |
| Pfam | PF00397 | WW domain | 22 | 52 | 2.8E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 521 | 691 | 3.4E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 728 | 836 | 5.9E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 569 | 851 | 2.09E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 52 | 4.96E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 55 | 3.9E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 471 | 705 | 5.4E-90 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 706 | 877 | 5.9E-58 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 54 | 4.0E-8 | IPR001202 |
| SMART | SM00487 | ultradead3 | 516 | 719 | 1.3E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 752 | 836 | 6.0E-34 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.8415 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 528 | 702 | 31.515287 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 497 | 525 | 11.408521 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 731 | 875 | 25.347542 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 648 | 656 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 1143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1083 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1029 | 1052 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1084 | 1112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 993 | 1028 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021757000.1 | DEAD-box ATP-dependent RNA helicase 40-like [Chenopodium quinoa] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW2 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology