Basic Information
Locus ID:
CQ.Regalona.r1.3BG0012350
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger BED domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 14174226 | 14176706 | - | CQ.Regalona.r1.3BG0012350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 50,725.12 Da | 35.46 | 72.64 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14372 | Domain of unknown function (DUF4413) | 250 | 350 | 2.1E-27 | IPR025525 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 64 | 116 | 7.97E-6 | IPR036236 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 161 | 424 | 4.78E-26 | IPR012337 |
| SMART | SM00614 | bed5 | 61 | 114 | 7.0E-14 | - |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 61 | 119 | 10.508511 | IPR003656 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G42170.2 | - | 0 |
| RefSeq | XP_021739161.1 | zinc finger BED domain-containing protein RICESLEEPER 1-like [Chenopodium quinoa] | 0 |
| Q6AVI0 | Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MF79 | BED-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_18523, gene_18908, gene_24739, gene_757 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah002403, Ah025340, Ah025341, Ah035896 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g136250, BVRB_7g170450 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg16564, Sbi_jg23483, Sbi_jg33887, Sbi_jg40651 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14931, Seu_jg27982 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl18348, Sgl25401, Sgl30582, Sgl30712, Sgl32903, Sgl38164 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006175, gene:ENSEOMG00000019503 |
| Amaranthaceae | Chenopodium quinoa | 30 | CQ.Regalona.r1.1AG0015170, CQ.Regalona.r1.1BG0000790 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009065 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16891 |
| Zosteraceae | Zostera marina | 2 | Zosma04g10920.v3.1, Zosma04g21000.v3.1 |