Basic Information
Locus ID:
CQ.Regalona.r1.3BG0012020
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 13536610 | 13538202 | - | CQ.Regalona.r1.3BG0012020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 46,454.92 Da | 43.19 | 79.52 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 20 | 59 | 1.0E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 189 | 230 | 7.2E-9 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 147 | 181 | 2.1E-4 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 68 | 2.22E-8 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 110 | 377 | 5.49E-36 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 98 | 332 | 2.4E-32 | IPR015915 |
| SMART | SM00612 | kelc_smart | 147 | 195 | 4.2E-6 | IPR006652 |
| SMART | SM00612 | kelc_smart | 197 | 244 | 3.1E-5 | IPR006652 |
| SMART | SM00256 | fbox_2 | 22 | 62 | 1.4E-5 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021774721.1 | F-box/kelch-repeat protein SKIP20-like [Chenopodium quinoa] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M5G1 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology