Basic Information
Locus ID:
CQ.Regalona.r1.3BG0011350
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 12473330 | 12478998 | + | CQ.Regalona.r1.3BG0011350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 33,708.60 Da | 52.46 | 77.03 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 47 | 128 | 2.7E-15 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 43 | 135 | 4.71E-24 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 19 | 148 | 2.1E-23 | IPR036431 |
| SMART | SM00501 | bright_3 | 44 | 133 | 1.2E-23 | IPR001606 |
| SMART | SM01014 | ARID_2 | 40 | 128 | 1.4E-20 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 43 | 132 | 21.803602 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 3 | 27 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021774792.1 | high mobility group B protein 10-like [Chenopodium quinoa] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M5N6 | ARID domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology