Basic Information
Locus ID:
CQ.Regalona.r1.3BG0010370
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Short Name:
CHIA1
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 11190076 | 11193225 | - | CQ.Regalona.r1.3BG0010370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 38,317.67 Da | 43.70 | 58.46 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 94 | 324 | 3.3023E-110 | - |
| CDD | cd00035 | ChtBD1 | 30 | 69 | 1.65409E-10 | - |
| Pfam | PF00182 | Chitinase class I | 93 | 324 | 3.1E-116 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 30 | 69 | 1.3E-9 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 30 | 80 | 1.23E-9 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 90 | 331 | 4.5E-100 | IPR023346 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 176 | 232 | 6.2E-115 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 94 | 325 | 6.2E-115 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 28 | 71 | 4.3E-12 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 30 | 69 | 9.1E-8 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 2 | 331 | 6.9E-121 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 28 | 71 | 9.249912 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 41 | 60 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 236 | 246 | - | IPR000726 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_021774912.1 | endochitinase-like [Chenopodium quinoa] | 0 |
| Q949H3 | Inactive chitinase-like protein 1 OS=Hevea brasiliensis OX=3981 GN=CHI-L1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803M5X6 | Glyco_hydro_19_cat domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology