Basic Information
Locus ID:
CQ.Regalona.r1.3BG0009730
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 10273523 | 10285402 | + | CQ.Regalona.r1.3BG0009730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 66,950.84 Da | 52.21 | 60.46 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 137 | 187 | 2.45374E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 206 | 268 | 9.5E-14 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 285 | 333 | 1.8E-9 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 566 | 591 | 2.98E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 275 | 5.0E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 215 | 1.52E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 335 | 3.89E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 218 | 2.2E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 264 | 524 | 7.2E-84 | - |
| SMART | SM00647 | ibrneu5 | 272 | 342 | 0.06 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 206 | 268 | 2.1E-21 | IPR002867 |
| SMART | SM00547 | zf_4 | 566 | 590 | 2.6E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 564 | 591 | 9.066148 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 133 | 346 | 49.892517 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 181 | 8.609239 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 568 | 587 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 560 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021721720.1 | probable E3 ubiquitin-protein ligase ARI7 [Chenopodium quinoa] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LMA6 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology