Basic Information
Locus ID:
CQ.Regalona.r1.3BG0008450
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Polyubiquitin-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 8835590 | 8836459 | - | CQ.Regalona.r1.3BG0008450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 32,497.32 Da | 32.13 | 106.16 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 63 | 132 | 1.6421E-4 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 141 | 208 | 4.61687E-5 | - |
| Pfam | PF00240 | Ubiquitin family | 143 | 207 | 8.0E-6 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 211 | 279 | 2.07E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 61 | 132 | 1.58E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 134 | 209 | 2.1E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 136 | 210 | 3.3E-7 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 211 | 288 | 3.4E-8 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 53 | 135 | 4.4E-7 | - |
| SMART | SM00213 | ubq_7 | 211 | 278 | 4.9 | IPR000626 |
| SMART | SM00213 | ubq_7 | 139 | 210 | 1.5 | IPR000626 |
| SMART | SM00213 | ubq_7 | 63 | 134 | 1.1 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 211 | 279 | 10.614717 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 61 | 132 | 10.810696 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 139 | 208 | 11.463958 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021722001.1 | polyubiquitin-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LMN7 | Ubiquitin-like domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |