Basic Information
Locus ID:
CQ.Regalona.r1.3BG0005260
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 5744628 | 5759255 | - | CQ.Regalona.r1.3BG0005260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 189,267.56 Da | 47.71 | 72.27 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08879 | WRC | 8 | 45 | 3.9E-7 | IPR014977 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1474 | 1561 | 4.7E-13 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1111 | 1651 | 3.43E-26 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1103 | 1351 | 3.9E-86 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1396 | 1646 | 1.0E-59 | - |
| SMART | SM00384 | AT_hook_2 | 600 | 612 | 8.5 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 374 | 386 | 2.3 | IPR017956 |
| SMART | SM00558 | cupin_9 | 1217 | 1583 | 6.3E-52 | IPR003347 |
| SMART | SM00384 | AT_hook_2 | 683 | 695 | 8.1 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 472 | 484 | 2.2 | IPR017956 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 798 | 844 | 8.71251 | IPR001841 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 6 | 51 | 15.189419 | IPR014977 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1224 | 1637 | 21.010441 | IPR003347 |
| PRINTS | PR00929 | AT-hook-like domain signature | 598 | 608 | 1.3E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 470 | 481 | 1.3E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 374 | 384 | 1.3E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 619 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_021729109.1 | uncharacterized protein LOC110696129 [Chenopodium quinoa] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L2J9 | WRC domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology