Basic Information
Locus ID:
CQ.Regalona.r1.3BG0002650
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 2951426 | 2959700 | + | CQ.Regalona.r1.3BG0002650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 54,101.52 Da | 42.00 | 83.32 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13857 | Ankyrin repeats (many copies) | 167 | 212 | 1.9E-6 | - |
| Pfam | PF00023 | Ankyrin repeat | 216 | 241 | 7.4E-5 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 2.4E-18 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 370 | 1.31E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 268 | 3.32E-48 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 295 | 381 | 6.1E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 145 | 1.0E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 146 | 262 | 5.3E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 215 | 247 | 1.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 1.1 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 172 | 201 | 2.1E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 215 | 241 | 10.68342 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.416153 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 215 | 241 | 10.71288 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 172 | 201 | 10.073198 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 172 | 204 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 314 | 364 | 9.405901 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.409914 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.53241 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.430799 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 329 | 338 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 477 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021765155.1 | E3 ubiquitin-protein ligase XBAT33-like [Chenopodium quinoa] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M0G7 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology