Basic Information
Locus ID:
CQ.Regalona.r1.3BG0002510
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 2814046 | 2828275 | - | CQ.Regalona.r1.3BG0002510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 123,927.82 Da | 46.24 | 79.78 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 210 | 272 | 6.0E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 769 | 829 | 6.4E-11 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 292 | 333 | 1.41E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 769 | 836 | 1.32E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 279 | 3.41E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 136 | 222 | 2.45E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 697 | 777 | 3.59E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 222 | 3.2E-14 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 268 | 517 | 1.7E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 694 | 780 | 4.6E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 864 | 994 | 1.5E-14 | - |
| SMART | SM00647 | ibrneu5 | 768 | 829 | 2.0E-14 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 210 | 272 | 2.6E-11 | IPR002867 |
| SMART | SM00184 | ring_2 | 699 | 747 | 1.6 | IPR001841 |
| SMART | SM00184 | ring_2 | 141 | 189 | 0.095 | IPR001841 |
| SMART | SM00184 | ring_2 | 235 | 301 | 4.0 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 187 | 8.948558 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 695 | 926 | 18.209124 | IPR044066 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 137 | 350 | 30.711012 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1042 | 1073 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1042 | 1077 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021764921.1 | probable E3 ubiquitin-protein ligase ARI7 [Chenopodium quinoa] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M0H9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology