Basic Information
Locus ID:
CQ.Regalona.r1.3BG0000130
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 163595 | 175783 | + | CQ.Regalona.r1.3BG0000130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 59,998.06 Da | 45.45 | 91.31 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 64 | 182 | 4.911E-24 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 38 | 365 | 1.5E-57 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 86 | 141 | 1.8E-5 | IPR002934 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 26 | 219 | 1.19E-36 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 224 | 365 | 2.88E-46 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 370 | 478 | 4.12E-13 | IPR011068 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 57 | 217 | 1.8E-100 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 370 | 468 | 1.8E-5 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 37 | 363 | 1.8E-100 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 26 | 474 | 1.2E-130 | IPR014492 |
| Coils | Coil | Coil | 69 | 89 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06560.1 | poly(A) polymerase 3. Encodes a poly(A) polymerase. Located in the cytoplasm. | 0 |
| RefSeq | XP_021739908.1 | nuclear poly(A) polymerase 3-like [Chenopodium quinoa] | 0 |
| Q56XM9 | Nuclear poly(A) polymerase 3 OS=Arabidopsis thaliana OX=3702 GN=PAPS3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MND1 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology